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Moody, James. “Fighting a Hydra: A Note on the Network Embeddedness of the War on Terror”, Structure and Dynamics: eJournal of Anthropological and Related Sciences: 1(2): Article 9. (local version of the web calculator here).
Moody, James, Daniel A. McFarland and Skye Bender-DeMoll. 2005. "Dynamic Network Visualization: Methods for Meaning with Longitudinal Network Movies” American Journal of Sociology 110:1206-1241 (web version, with movies, requires AJS subscription can be had here).
Moody, James. 2004. "The Structure of a Social Science Collaboration Network" American Sociological Review. 69:213-238
Bearman, Peter S., James Moody, and Katherine Stovel. “Chains of Affection.” American Journal of Sociology 110:44-91

Bearman, Peter S. and James Moody. 2004. “Adolescent Suicidality.” American Journal of Public Health. 94:89-95
White, Douglas R., Jason Owen-Smith, James Moody, and Walter W. Powell. 2004. “Networks, Fields and Organizations" Computational and Mathematical Organization Theory 10:95-117
Moody, James and Douglas R. White. 2003. “Social Cohesion and Embeddedness.” American Sociological Review 68:103-127
Paxton, Pamela and James Moody. 2003. “Structure and Sentiment: Explaining Emotional Attachment to Group.” Social Psychology Quarterly 66:34-47
Moody, James. 2002. “The Importance of Relationship Timing for Diffusion: Indirect Connectivity and STD Infection Risk” Social Forces 81:25-56
Moody, James. 2001. “Race, School Integration, and Friendship Segregation in America.” American Journal of Sociology 107(3) 679:716
Moody, James. “Peer Influence Groups: Identifying Dense Clusters in Large Networks” Social Networks 23:261-283